None of those things become obsolete with capabilities.

You still need code signing because users need to be able to grant privileges in a way that sticks across upgrades. The object they want to privilege isn't a set of files on disk but a logical app as defined by (more or less) a brand name+app name even as it changes over time.

You still need antivirus software because users can be tricked into giving capabilities to programs that appear legit but are actually malicious.

Modern operating systems (iOS, Android) are capability oriented operating systems to the extent that makes sense. For some reason there's a meme that says capabilities are a magic wand that solves all security problems, but it's not the case.