In some cases, you can start by using the "at" functions (openat...) to work on a directory tree. If you have your logical "locking" done at the top-level of the tree, it might be a fine option.

In some other cases, I've used a pattern where I used a symlink to folders. The symlink is created, resolved or updated atomically, and all I need is eventual consistency.

That last case was to manage several APT repository indices. The indices were constantly updated to publish new testing or unstable releases of software and machines in the fleet were regularly fetching the repository index. The APT protocol and structure being a bit "dumb" (for better or worse) requires you to fetch files (many of them) in the reverse order they are created, which leads to obvious issues like the signature is updated only after the list of files is updated, or the list of files is created only after the list of packages is created.

Long story short, each update would create a new folder that's consistent, and a symlink points to the last created folder (to atomically replace the folder as it was not possible to swap them), and a small HTTP server would initiate a server side session when the first file is fetched and only return files from the same index list, and everything is eventually consistent, and we never get APT complaining about having signature or hash mismatches. The pivotal component was indeed the atomicity of having a symlink to deal with it, as the Java implementation didn't have access to a more modern "openat" syscall, relative to a specific folder.