The most interesting thing to me wasn't the equals signs, which I knew are from quoted-printable, but the fact that when an equals sign appears, a letter that should have been preceding or following it is missing. It's as if an off-by-one error has occurred, where instead of getting rid of the equals sign, it's gotten rid of part of the actual text. Perhaps the CRLF/LF thing is part of it.

That's exactly how you end up with mystery missing characters in something that's supposed to be evidence

The article goes into exactly why this happens!