I don't think it is possible to talk about fractions of nanoseconds without having an extremely good idea of the stability and accuracy of your clock. At best I think you could claim there is some kind of reduction but it is super hard to make such claims in the absolute without doing a massive amount of prep work to ensure that the measured times themselves are indeed accurate. You could be off by a large fraction and never know the difference. So unless there is a hidden atomic clock involved somewhere in these measurements I think they should be qualified somehow.

Stability and accuracy, when applied to clocks, are generally about dynamic range, i.e. how good is the scale with which you are measuring time. So if you're talking about nanoseconds across a long time period, seconds or longer, then yeah, you probably should care about your clock. But when you're measuring nanoseconds out of a millisecond or microsecond, it really doesn't matter that much and you're going to be OK with the average crystal oscillator in a PC. (and if you're measuring a 10% difference like in the article, you're going to be fine with a mechanical clock as your reference if you can do the operation a billion times in a row).