Author here! Overcommit is definitely a thing to watch out for. I believe TigerBeetle calls this out in their documentation. I think you'd have to explicitly disable it on Linux.

For the second question, yes, we have to keep track of what's in use. The keys and values are allocated via a memory pool that uses a free-list to keep track of what's available. When a request to add a key/value pair comes in, we first check if we have space (i.e. available buffers) in both the key pool and value pool. Once those are marked as "reserved", the free-list kind of forgets about them until the buffer is released back into the pool. Hopefully that helps!