It's a good question, and I wondered the same. I don't know, but I'd postulate:

As it stands at the minute, the clocks are a mere 5 microseconds out and will slowly get better over time. This isn't even in the error measurement range and so they know it's not going to have a major effect on anything.

When the event started and they lost power and access to the site, they also lost their management access to the clocks as well. At this point they don't know how wrong the clocks are, or how more wrong they're going to get.

If someone restores power to the campus, the clocks are going to be online (all the switches and routers connecting them to the internet suddenly boot up), before they've had a chance to get admin control back. If something happened when they were offline and the clocks drifted significantly, then when they came online half the world might decide to believe them and suddenly step change to follow them. This could cause absolute havoc.

Potentially safer to scram something than have it come back online in an unknown state, especially if (lots of) other things are are going to react to it.

In the last NIST post, someone linked to The Time Rift of 2100: How We lost the Future --- and Gained the Past. It's a short story that highlights some of the dangers of fractured time in a world that uses high precision timing to let things talk to each other: https://tech.slashdot.org/comments.pl?sid=7132077&cid=493082...