Then pray tell, how come that the most parallel and most demanding computations like weather simulations, fluid dynamics and stuff like that avoid superior Java like the plague? Shouldn't it have been a blessing with its easier parallelizable code?

The reality is that it's quite the opposite. Java boxed types, lack of control over memory layouts leading to page flapping and false sharing, lack of fast synchronisation primitives, lack of a compiler capable of hinted or automatic loop parallelization lead to Java being totally unsuitable here. The crown goes to FORTRAN in that regard, with C and C++ being second and third places.

Of course theoretically a magic fairy-tale Java compiler could look at the code, recognize all the aforementioned problems and fix them. Of course the language would allow for this to happen totally without changing semantics. But no Java compiler even comes close...